The JR Pass is a special pass available only to those entering Japan on a tourist visa. It allows for unlimited travel around Japan on JR lines usually at a price much less than purchasing individual tickets.
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Each hotel booked for us by our travel agent was convenient as it was beside the train stations, and information was provided as to how to get around the city by ourselves (who are non-Japanese speakers). Kyushu is recommended for those who prefer to travel and see traditional Japan, as opposed to Tokyo and Osaka. We arrived in one of the cities, and wasn't expecting snow. It made our onsen experience much better in Kurokawa.